Since the implementation of the Image Processing Core Unit, we had the opportunity to work with a tremendous amount of researchers in different projects. Below is an incomplete list of research projects in which the IPCU was involved.
University Leipzig
TRM-Leipzig
- Dr. Andreas Boldt, Biotechnological Development of Decellularised Matrix-tissue Scaffolds (T2300)
- Dr. Mike Francke, Riboflavin/UVA Collagen Cross Linking of the Mammalian Sclera to Treat Progressive Myopia (R2039)
- Dr. Henriette Jülke/ Dr. Uta Delling, Mesenchymal Stem Cell Labelling and in vivo Tracking for Cell-based Therapy in Joint Disease (C2005)
- Dr. Linda Milkova/ Dr. Vuk Savkovic, Melanocytes from the Outer Root Sheath of the Hair Follicle for Clinical Application (C2031)
- Dr. Claudia Heine, Screening-model for Characterisation and Quantification of Neuronal Growth to Identify Novel Therapeutics (R2044)
- Dr. Heidrun Holland, Authentication of Cell Lines (I2065)
- Dr. Anja Mittag, Quantitative Cytometric in vivo, ex vivo and in vitro Analyses (I2002)
- Dr. Jan Liese, Stem Cell Based Vascularised Mandibular Regeneration: A Preclinical Study in Minipigs (T2013)
- Dr. Jan Liese, Mandibular Onlay Grafting with Autologous Stem Cell Engineered Bone Grafts and Modulation with a Haematopoietic Protein: A Preclinical Study in Pigs (T1020)
- Karsten Winter, Comprehensive in vitro Model for the Engineering of Microvasculature – Evaluation of Morphological and Functional Data (1050SF)
- Dr. Matthias Pretzsch, Acceleration of Bone Regeneration through Application of Erythropoietin (1029AB)
- Dr. Marco Skardelly, Stem Cell Transplantation after Traumatic Brain Injury (TBI): Determination of the Optimal Prerequisites Concerning Route, Timepoint, and the Need of Immunosuppression after TBI to Establish a Successful Transplantation Model (1100SF)
- Dr. Janina Burk, Detection of SPIO marked cells in tendon tissue using MRI and histology
- Margarethe Köberle, Histological scans of HE stained slides
- Andrea Friedmann, Histological scans of bone sections
- Susanne Przybylski, Histological scans of slides from a GvHD-mouse-model.
- Kathleen Schröck, Segmentation and morphological analysis of adipose tissue
- Alexander Kranz, Visualization of ratios of areas with the help of overlapping circles
- Johanna Scholbach, Quantification of erythrocytes in spleen tissue sections
Center for Biotechnology and Biomedicine
- Oliver Petters, Project consultation for the analysis of spherically grown cartilage tissue
- Bastian Pfeifer, Histological scans of differently stained mouse tissue slides
- Matthias Zscharnack, 3d reconstruction and visualisation of serial images
Department of Cariology, Endodontology and Periodontology
- Dr. Hartmuth Schneider, Analysis of penetration depth of different materials in dental OCT images
- Tobias Meißner, Quantification of fissure-sizes in dental fillings
Department of Dermatology, Venerology and Allergology
- Dr. Tino Wetzig, 3d Reconstruction of Basal Cell Carcinoma
Department of Nuclear Medicine
- Prof. Swen Hesse, Analysis of serotonin and dopamine transporter binding in SPECT data
Department of Obstetrics and Gynecology
- Dr. Jens Einenkel, Quantitative assessment of blood vessel structure
Department of Ophthalmology
- Dr. Franziska Rauscher, Modelling of fovea from OCT Data
- Dr. Franziska Rauscher, Development of importer software for Heidelberg Spectralis OCT
Paul-Flechsig-Institute for Brain Research
- Dr. Mike Francke, Modelling and analysis for path of rays in a fovea
- Dr. Mike Francke, Quantitative analysis of foveal structures in birds
- Dr. Mike Francke, Influence of medication on the spherical structure of bovine eye balls
Department of Oral and Maxillofacial Surgery
- Prof. Berhard Frerich, Tissue engineering and bioreactor development for maxillofacial surgery
- Prof. Berhard Frerich, Development of control software for perfusion pumps
- Prof. Berhard Frerich, Development of conversion software for MIRAX data sets
- Prof. Berhard Frerich, Segmentation and quantification of cone-beam tomography data of bone constructs in mice
- Prof. Thomas Hierl, Segmentation of fine details in skull CT
- Dr. Christian Voigt, Consultation for memory and runtime complexity of 3d reconstruction algorithms in Python
- Dr. Jan Liese, Tissue engineering in a porcine in-vivo model
- Dr. Niels Pausch, Analysis of primary cleft lip closure study data
- Dr. Jörg Hendricks, Analysis of data from a multi center study dealing with Bisphosphonate-induced osteonecrosis of the jaw
- Dr. Dirk Halama, Visualisation of fluorescence in multi-channel video data
Faculty of Veterinary Medicine, Department of Small Animal Medicine
- Dr. Ingmar Kiefer, Evaluation of lymph node and spleen studies in dogs
Faculty of Veterinary Medicine, Institute of Bacteriology and Mycology
- Kathleen Frohberg, Analysis of laser scattering patterns
Faculty of Veterinary Medicine, Institute of Physiological Chemistry
- Axel Schöniger, Background correction and consistency verification in fluorescence images
Faculty of Veterinary Medicine, Institute for Veterinary Anatomy
- Sonja Bystron, 3D Segmentation of bovine hoof structures
Faculty of Veterinary Medicine, Large Animal Clinic for Surgery
- Prof. Walter Brehm, Correlation of different diagnostic methods in horses
- Dr. Kerstin Gerlach, Development of specialized image filters
- Dr. Kerstin Gerlach, Analysis of scintigraphic images
- Dr. Dagmar Berner, Analysis of radiographic images
- Dr. Dagmar Berner, Analysis of spinous processes in equine thoracic spines
- Dr. Marco Grzbowsky, Segmentation of equine blood vessels
- Dr. Uta Delling, Stem cells for equine tendon repairs
- Dr. Doreen Scharner, Evaluation of equine laparotomy study data
- Dr. Doreen Scharner, Evaluation of surgical techniques
- Dr. Jean-Claude Ionita, Optimisation of sedation and validation of a new blood-gas analysis device for camels
- Dr. Jean-Claude Ionita, Evaluation of different systems for the production of autologous blood products
- Dr. Antonia Troillet, Analyses of equine suspensory ligaments
- Dr. Antonia Troillet, Analysis of weather data for colic horses
- Dr. Janina Burk, Registration and quantification of radiographic images of lesions in equine legs
- Miguel Espina, Evaluation and optimization of stem-cell transport conditions
- Mahmoud Mageed, Analysis of inter-rater variability for the evaluation of scintigraphic images
- Christina Grosser, Analysis of equine hypophyses
- Sophie Graf, Analysis of equine blood parameters
Heart Center Leipzig
- Dr. Wilfried Briest, Measurement of the aorta diameter in Micro-CT scans of mouse hearts
Institute for Medical Informatics, Statistics and Epidemiology (IMISE)
- Dr. Ulf-Dietrich Braumann, Histomorphometric evaluation of human prostate biopsies
- Dr. Peter Ahnert, Registration and quantification of fluorescence images
- Dr. Markus Kreuz, Analysis of microarray gene expression data
Institute of Medical Physics and Biophysics
- Dr. Olaf Zschörnig, Software development for 2d MALDI plate template generation
Institute for Pharmacy
- Prof. Michaela Schulz-Siegmund, Digitalisation of unstable cryo-sections of implanted optical insulin sensors
Rudolf Boehm Institute of Pharmacology and Toxicology
- Dr. Claudia Heine, Histological scans of rat brains
- Dr. Claudia Heine, Consultation for image acquisition and technical details concerning microscopic magnification
- Katja Sygnecka, Quantification of PI uptake in organotypic brain slice preparations
- Thomas Krügel, Microscopic scans of immunohistologically stained sections
University Rostock
Department of Ophthalmology
- Prof. Rudolf Guthoff, Development of software modules for the quantification of pre-segmented corneal nerve fibers
- Prof. Oliver Stachs, Quantification of corneal nerve fiber networks
- Prof. Oliver Stachs, Analysis of corneal epithelial structures
Department of Physics
- Dr. Stephan Reiß, Evaluation of focal areas for different optical lens properties
- Dr. Cornelia Ganz, Quantification of fluorescent bone slides
Department of Oral and Maxillofacial Surgery
- Prof. Bernhard Frerich, Quantification of adipose and osseous constructs in vivo SCID-mouse models
- Prof. Bernhard Frerich, Digitalisation and quantification of histological and fluorescence slides
- Prof. Bernhard Frerich, Digitalisation of iron particle labeled slides
- Dr. Jan Liese, Quantification of nuclei in oral mucosa
- Christian Dinu, Evaluation of BMP-2 and pro-BMP-2 in bone formation
Charité Berlin
Medical Physics and Optical Diagnostics Study Group
- Dr. Olaf Minét, Quantification of Rheumatoid arthritis. Development of a standalone analysis software tool
Military Hospital Ulm
Department of Oral and Maxillofacial Surgery
- Dr. Frank Wilde, Analysis of studies for mandible reconstruction and bisphosphonate-related osteonecrosis of the jaw
German Diabetes Center Düsseldorf
Institute for Clinical Diabetology
- Prof. Dan Ziegler, Quantification of the sub-basal nerve plexus in recently diagnosed type 2 diabetes
Karlsruhe Institute of Technology
Institute for Applied Computer Science
- Dr. Bernd Köhler, Segmentation and quantification of corneal nerve fibers in CLSM images and large-scale reconstructions
University of Applied Sciences Jena
Department of SciTec
- Prof. Robert Brunner, Conversion of model data for ray path simulations
University Regensburg
Department of Surgery
- Dr. Gerit Hackmayer, Evaluation of imaging quality for subchondral bone CT-Scans